DocumentCode
2646666
Title
Gene selection in microarray data from multi-objective perspective
Author
Sabzevari, Shahram ; Abdullah, Salwani
Author_Institution
Center for Artificial Intell. Technol., Univ. Kebangsaan Malaysia (UKM), Bangi, Malaysia
fYear
2011
fDate
28-29 June 2011
Firstpage
199
Lastpage
207
Abstract
Microarray technology provides a platform to study expression level of thousands of genes simultaneously, but its high dimensionality and noisy nature forces the usage of dimensionality reduction techniques. Among these techniques feature selection seems to be more favorable due to its goal to preserve feature semantic. Feature selection is also called gene selection while applied to genetic data. Inherently, gene selection objectives are manifold which makes it a proper candidate for multi-objective optimization. There are three different ways to deal with fitness evaluation in multi-objective literature. Between these three the Pareto base approach seems to deliver more promising advantages to the biologist, but it did not grab that much attention till now, probably due to its computational complexity. The intention of this paper is to provide an insight to gene selection problem from multi-objective perspective. Although, covering all the proposed methods are impossible, but hopefully those algorithms discussed here are enough to show the common trend in multi-objective gene selection in microarray data.
Keywords
biology computing; computational complexity; data reduction; optimisation; computational complexity; dimensionality reduction techniques; feature selection; gene selection; microarray data; multiobjective optimization; Classification algorithms; Gene expression; Genetic algorithms; Information filters; Optimization; Feature selection; Gene selection; Microarray; Multi-objective optimization; Pareto optimality;
fLanguage
English
Publisher
ieee
Conference_Titel
Data Mining and Optimization (DMO), 2011 3rd Conference on
Conference_Location
Putrajaya
ISSN
2155-6938
Print_ISBN
978-1-61284-211-0
Electronic_ISBN
2155-6938
Type
conf
DOI
10.1109/DMO.2011.5976528
Filename
5976528
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