Title :
Primary Study on Rapid Detection of European Brown Hare Syndrome Virus by RT-LAMP
Author :
Yang, Zexiao ; Wei, Xianchao ; Wang, Yin ; Yao, Xueping ; Wang, Kaiyu ; Zhu, Ling ; Han, Xueqing ; Yang, Zengqi ; Shi, Huaiping ; Zhang, Yanming
Author_Institution :
Coll. of Veterinary Med., Sichuan Agric. Univ., Yaan, China
Abstract :
To develop the reverse transcriptase loop-mediated isothermal amplification (RT-LAMP) method for the detection of European brown hare syndrome virus (EBHSV), a set of 6 primers were designed according to the conserved sequence of the capsid protein(VP60)gene of EBHSV published in GenBank, and the RT-LAMP assay was described through synthesis of target DNA fragments, optimization of reaction conditions, sensitivity and specificity tests. Results showed the RT-LAMP method for the EBHSV detection had a ladder-like pattern of amplication bands from about 233 bp incubation at 64°C for 1h by using agarose gel electrophoresis, and with good specificity and sensitivity. The sensitivity of the RT-LAMP could reach about 5 copies of cloned viral genomic fragments (pGM-T-EBHSV), and no amplifications for RHDV, Pasteur Ella multocida, E.coli and Salmonella from rabbits detection by this approach.
Keywords :
biochemistry; electrophoresis; gels; genetics; genomics; microorganisms; proteins; EBHSV detection; European brown hare syndrome virus; GenBank; RT-LAMP; VP60 gene; agarose gel electrophoresis; capsid protein; cloned viral genomic fragments; ladder-like pattern; primary study; rapid detection; reverse transcriptase loop-mediated isothermal amplification; temperature 64 C; time 1 hr; DNA; Diseases; Europe; Inspection; Rabbits; Sensitivity; Visualization; European brown hare syndrome virus; RT-LAMP; VP60 gene;
Conference_Titel :
Biomedical Engineering and Biotechnology (iCBEB), 2012 International Conference on
Conference_Location :
Macau, Macao
Print_ISBN :
978-1-4577-1987-5
DOI :
10.1109/iCBEB.2012.313