Title :
Budding yeast cell cycle modeled by context-sensitive probabilistic Boolean network
Author :
Hashimoto, Ronaldo Fumio ; Stagni, Henrique ; Higa, Carlos Henrique Aguena
Author_Institution :
Inst. of Math. & Stat., Univ. of Sao Paulo, Sao Paulo, Brazil
Abstract :
The yeast (Saccharomyces cerevisiae) cell cycle has been studied for years, providing us a good knowledge about this cellular process. However, behind this process, there are still complex interactions between genes and proteins that are not fully understood. In this paper, we present a yeast cell cycle modeled by a context-sensitive probabilistic Boolean network (cPBN). The importance of understanding the cell cycle process under this model is that this knowledge may be useful for inferring other gene regulatory networks (cPBNs) from biological data. Furthermore, this work shows an application of the cPBN model for a real biological system.
Keywords :
Boolean functions; cellular biophysics; genetics; microorganisms; molecular biophysics; probability; proteins; Saccharomyces cerevisiae; budding yeast cell cycle model; cPBN model; cell cycle process; cellular process; context-sensitive probabilistic Boolean network; gene regulatory networks; gene-protein interactions; real biological system; Biological cells; Biological system modeling; Cells (biology); Context modeling; Fungi; Mathematical model; Mathematics; Proteins; Stochastic processes; Stochastic resonance;
Conference_Titel :
Genomic Signal Processing and Statistics, 2009. GENSIPS 2009. IEEE International Workshop on
Conference_Location :
Minneapolis, MN
Print_ISBN :
978-1-4244-4761-9
Electronic_ISBN :
978-1-4244-4762-6
DOI :
10.1109/GENSIPS.2009.5174356