Title :
Existence conditions for oscillations in cyclic gene regulatory networks with time delay
Author :
Takada, Masaaki ; Hori, Yutaka ; Hara, Shinji
Author_Institution :
Dept. of Math. Eng. & Inf. Phys., Univ. of Tokyo, Tokyo, Japan
Abstract :
In this paper, we present analytic criteria for the existence of oscillations in gene regulatory networks with cyclic structure. In particular, inherent time delays in transcription, translation and translocation process are explicitly treated, and the effects of such time delays are quantitatively revealed. We first show that local instability of the unique equilibrium state results in oscillations of protein concentrations based on the Poincaré-Bendixson theorem for cyclic time delay systems. Then, a scheme of local instability analysis for large-scale time delay systems is introduced, and the analytic criteria for the existence of oscillations are derived. The developed criteria can be applied to cyclic gene regulatory networks consisting of any number of genes, and they are expressed only in terms of biochemical parameters, which lead to fruitful biological insight.
Keywords :
delays; oscillations; Poincare-Bendixson theorem; analytic criteria; biochemical parameter; cyclic gene regulatory network; cyclic structure; cyclic time delay system; existence condition; large-scale time delay system; local instability analysis; oscillation; protein concentration; translocation process; unique equilibrium state; Analytical models; Biological system modeling; Degradation; Delay effects; Oscillators; Proteins;
Conference_Titel :
Control Applications (CCA), 2010 IEEE International Conference on
Conference_Location :
Yokohama
Print_ISBN :
978-1-4244-5362-7
Electronic_ISBN :
978-1-4244-5363-4
DOI :
10.1109/CCA.2010.5611130