DocumentCode
2708763
Title
A Grid Service for Pattern Extraction from Mass Spectrometry Data
Author
Cannataro, Mario ; Veltri, Pierangelo
Author_Institution
Univ. Magna Graecia of Catanzaro, Catanzaro, Italy
fYear
2006
fDate
1-3 Nov. 2006
Firstpage
36
Lastpage
36
Abstract
The paper presents a Grid Service allowing to detect and extract the longest common sub-spectrum among a set of mass spectrometry spectra data. The service is based on a novel pattern extraction algorithm named LCSS (Longest Common Spectra SubString) that adapts a very popular string matching technique based on Suffix Trees to spectra data. The core of the algorithm and a first performance evaluation of the related Grid Service are discussed.
Keywords
bioinformatics; grid computing; mass spectroscopy; string matching; trees (mathematics); LCSS; grid service; longest common spectra substring; mass spectrometry spectra data; pattern extraction algorithm; string matching; suffix trees; Grid Services; Mass Spectrometry; Pattern Extraction; Suffix Tree;
fLanguage
English
Publisher
ieee
Conference_Titel
Semantics, Knowledge and Grid, 2006. SKG '06. Second International Conference on
Conference_Location
Guilin
Print_ISBN
0-7695-2673-X
Type
conf
DOI
10.1109/SKG.2006.6
Filename
5727673
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