• DocumentCode
    2724719
  • Title

    eResearch Solutions for High Throughput Structural Biology

  • Author

    Faux, Noel ; Beitz, Anthony ; Bate, Mark ; Amin, Abdullah A. ; Atkinson, Ian ; Enticott, Colin ; Mahmood, Khalid ; Swift, Matthew ; Treloar, Andrew ; Abramson, David ; Whisstock, James C. ; Buckle, Ashley M.

  • Author_Institution
    Monash Univ., Clayton
  • fYear
    2007
  • fDate
    10-13 Dec. 2007
  • Firstpage
    221
  • Lastpage
    227
  • Abstract
    Structural biology research places significant demands upon computing and informatics infrastructure. Protein production, crystallization and X-ray data collection require solutions to data management, annotation, target tracking and remote experiment monitoring. Structure elucidation is computationally demanding and requires user-friendly interfaces to high-performance computing resources. Here we discuss how these challenges are being met at the Protein Crystallography Unit at Monash University. Specifically, we have developed informatics solutions for each stage in the structural biology pipeline, from DNA cloning through to protein structure determination. This infrastructure will be pivotal for accelerating the process of structural discovery and will be of significant interest to other laboratories worldwide.
  • Keywords
    DNA; biology computing; data analysis; molecular biophysics; molecular configurations; proteins; research and development; user interfaces; DNA cloning; X-ray data collection; computing infrastructure; crystallization; data annotation; data management; eResearch solutions; high throughput structural biology; high-performance computing resources; informatics infrastructure; protein crystallography unit; protein production; protein structure determination; remote experiment monitoring; structure elucidation; target tracking; user-friendly interfaces; Biology computing; Computer interfaces; Crystallization; Crystallography; Informatics; Production; Proteins; Remote monitoring; Target tracking; Throughput;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    e-Science and Grid Computing, IEEE International Conference on
  • Conference_Location
    Bangalore
  • Print_ISBN
    978-0-7695-3064-2
  • Type

    conf

  • DOI
    10.1109/E-SCIENCE.2007.31
  • Filename
    4426891