• DocumentCode
    2743263
  • Title

    Data compression in hardware — The Burrows-Wheeler approach

  • Author

    Arming, S. ; Fenkhuber, R. ; Handl, T.

  • Author_Institution
    Inst. of Comput. Eng., Vienna Univ. of Technol., Vienna, Austria
  • fYear
    2010
  • fDate
    14-16 April 2010
  • Firstpage
    60
  • Lastpage
    65
  • Abstract
    Nowadays, data compression is used in nearly every field of digital applications. Many efforts have been taken to improve the theory of compression algorithms, albeit these approaches are mostly suitable for software implementation. Hardware implementations are sometimes suggested, but in general rarely found. Many approaches rely on some kind of LZ-method, which are generally fast but lack compression rate. This paper focuses on the Burrows-Wheeler Transform (BWT) as it is becoming increasingly important through the many benefits it provides and potentially even more so, if implemented in hardware. Two methods of the forward transform are compared and tested at realistic block sizes. Furthermore a implementation of a bzip2 compression system for Field programmable gate arrays (FPGAs) is described.
  • Keywords
    data compression; field programmable gate arrays; FPGA; LZ-method; burrow-wheeler transform approach; bzip2 compression system; data compression; field programmable gate arrays; Application software; Bioinformatics; Compression algorithms; Data compression; Data engineering; Embedded computing; Field programmable gate arrays; Genomics; Hardware; Sorting;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Design and Diagnostics of Electronic Circuits and Systems (DDECS), 2010 IEEE 13th International Symposium on
  • Conference_Location
    Vienna
  • Print_ISBN
    978-1-4244-6612-2
  • Type

    conf

  • DOI
    10.1109/DDECS.2010.5491817
  • Filename
    5491817