• DocumentCode
    2764447
  • Title

    A conceptual data model for transcriptome project pipeline

  • Author

    Huacarpuma, Ruben Cruz ; Holanda, Maristela T. ; Walter, Maria Emilia M T

  • Author_Institution
    Comput. Sci. Dept., Univ. of Brasilia, Brasilia, Brazil
  • fYear
    2011
  • fDate
    12-15 Nov. 2011
  • Firstpage
    13
  • Lastpage
    18
  • Abstract
    In recent years, high-throughput sequencing techniques have been generating millions of biological sequences in genome projects. These enormous volume of data must be stored and treated in order to support biological research. In this work, we describe a model to represent, organize and structure data generated by a computational pipeline to support a trancriptome project. As a case study, we propose a conceptual model for a pipeline to manage original (untreated) and produced (processed) data of a transcriptome project which has the objective to identifying differentially expressed genes between liver and kidney RNA samples.
  • Keywords
    biology computing; genetics; genomics; medical computing; molecular biophysics; molecular configurations; computational pipeline; conceptual data model; gene; high-throughput sequencing technique; kidney RNA sample; liver RNA sample; transcriptome project pipeline; Bioinformatics; Biological system modeling; Data models; Genomics; Object oriented modeling; Pipelines; Unified modeling language; bioin-formatics; conceptual model; data modeling; genome project; pipeline;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Bioinformatics and Biomedicine Workshops (BIBMW), 2011 IEEE International Conference on
  • Conference_Location
    Atlanta, GA
  • Print_ISBN
    978-1-4577-1612-6
  • Type

    conf

  • DOI
    10.1109/BIBMW.2011.6112349
  • Filename
    6112349