DocumentCode
2764447
Title
A conceptual data model for transcriptome project pipeline
Author
Huacarpuma, Ruben Cruz ; Holanda, Maristela T. ; Walter, Maria Emilia M T
Author_Institution
Comput. Sci. Dept., Univ. of Brasilia, Brasilia, Brazil
fYear
2011
fDate
12-15 Nov. 2011
Firstpage
13
Lastpage
18
Abstract
In recent years, high-throughput sequencing techniques have been generating millions of biological sequences in genome projects. These enormous volume of data must be stored and treated in order to support biological research. In this work, we describe a model to represent, organize and structure data generated by a computational pipeline to support a trancriptome project. As a case study, we propose a conceptual model for a pipeline to manage original (untreated) and produced (processed) data of a transcriptome project which has the objective to identifying differentially expressed genes between liver and kidney RNA samples.
Keywords
biology computing; genetics; genomics; medical computing; molecular biophysics; molecular configurations; computational pipeline; conceptual data model; gene; high-throughput sequencing technique; kidney RNA sample; liver RNA sample; transcriptome project pipeline; Bioinformatics; Biological system modeling; Data models; Genomics; Object oriented modeling; Pipelines; Unified modeling language; bioin-formatics; conceptual model; data modeling; genome project; pipeline;
fLanguage
English
Publisher
ieee
Conference_Titel
Bioinformatics and Biomedicine Workshops (BIBMW), 2011 IEEE International Conference on
Conference_Location
Atlanta, GA
Print_ISBN
978-1-4577-1612-6
Type
conf
DOI
10.1109/BIBMW.2011.6112349
Filename
6112349
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