DocumentCode
2764889
Title
Brdicka curve — A new source of biomarkers
Author
Vyslouzilova, Lenka ; Adam, Vojtech ; Szaboova, Andrea ; Stepankova, Olga ; Kizek, Rene ; Anyz, Jiri
Author_Institution
Dept. of Cybern., CVUT, Prague, Czech Republic
fYear
2011
fDate
12-15 Nov. 2011
Firstpage
193
Lastpage
198
Abstract
This paper is devoted to analysis of voltammograms resulting from Brdicka reaction - the graphs that are currently used for determination of content of metallothioneins (MT) in tissue samples most often. We describe our search for typical patterns in the considered curves that would make it possible to distinguish among voltammograms produced by samples taken from different body parts. We suggest a rather compact representation of information contained in the considered graphs that is based on Haar´s Simple Wavelet transformation. The resulting representation is successfully tested for classification of real data obtained from 8 rats and their 9 body parts. The preliminary experiments confirm that the suggested derived attributes of Brdicka curves seem to be good candidates for becoming numerical biomarkers exhibiting an important advantage: the process leading to their calculation can be fully automated.
Keywords
Haar transforms; biochemistry; biological tissues; graphs; molecular biophysics; proteins; signal classification; signal processing; voltammetry (chemical analysis); wavelet transforms; Brdicka curve; Haar simple wavelet transformation; data classification; metallothioneins; numerical biomarkers; rats; tissue samples; voltammograms; Blood; Decision trees; Metals; Muscles; Proteins; Tumors; Wavelet transforms; Classification; Electrochemical signal; Metallothionein;
fLanguage
English
Publisher
ieee
Conference_Titel
Bioinformatics and Biomedicine Workshops (BIBMW), 2011 IEEE International Conference on
Conference_Location
Atlanta, GA
Print_ISBN
978-1-4577-1612-6
Type
conf
DOI
10.1109/BIBMW.2011.6112374
Filename
6112374
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