• DocumentCode
    2764889
  • Title

    Brdicka curve — A new source of biomarkers

  • Author

    Vyslouzilova, Lenka ; Adam, Vojtech ; Szaboova, Andrea ; Stepankova, Olga ; Kizek, Rene ; Anyz, Jiri

  • Author_Institution
    Dept. of Cybern., CVUT, Prague, Czech Republic
  • fYear
    2011
  • fDate
    12-15 Nov. 2011
  • Firstpage
    193
  • Lastpage
    198
  • Abstract
    This paper is devoted to analysis of voltammograms resulting from Brdicka reaction - the graphs that are currently used for determination of content of metallothioneins (MT) in tissue samples most often. We describe our search for typical patterns in the considered curves that would make it possible to distinguish among voltammograms produced by samples taken from different body parts. We suggest a rather compact representation of information contained in the considered graphs that is based on Haar´s Simple Wavelet transformation. The resulting representation is successfully tested for classification of real data obtained from 8 rats and their 9 body parts. The preliminary experiments confirm that the suggested derived attributes of Brdicka curves seem to be good candidates for becoming numerical biomarkers exhibiting an important advantage: the process leading to their calculation can be fully automated.
  • Keywords
    Haar transforms; biochemistry; biological tissues; graphs; molecular biophysics; proteins; signal classification; signal processing; voltammetry (chemical analysis); wavelet transforms; Brdicka curve; Haar simple wavelet transformation; data classification; metallothioneins; numerical biomarkers; rats; tissue samples; voltammograms; Blood; Decision trees; Metals; Muscles; Proteins; Tumors; Wavelet transforms; Classification; Electrochemical signal; Metallothionein;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Bioinformatics and Biomedicine Workshops (BIBMW), 2011 IEEE International Conference on
  • Conference_Location
    Atlanta, GA
  • Print_ISBN
    978-1-4577-1612-6
  • Type

    conf

  • DOI
    10.1109/BIBMW.2011.6112374
  • Filename
    6112374