DocumentCode
2767645
Title
The analysis of DNA shuffling by nMDS
Author
Doi, Ryota ; Taguchi, Y.-H.
Author_Institution
Dept. of Phys., Chuo Univ., Tokyo, Japan
fYear
2011
fDate
12-15 Nov. 2011
Firstpage
1012
Lastpage
1013
Abstract
DNA shuffling is widely used for optimizing complex properties contained within DNA and proteins. However, success rate of it is deeply dependent upon which pair of DNAs is employed for DNA shuffling. In this paper, we have used non-metric multidimensional scaling (nMDS) to select best pair of DNAs for it. It turns out that nMDS can sometimes choose better pairs of DNAs than hierarchical clustering which is frequently used to select the suitable pair of DNAs.
Keywords
DNA; bioinformatics; biological techniques; molecular biophysics; molecular configurations; proteins; DNA shuffling analysis; nMDS; nonmetric multidimensional scaling; proteins; Clustering methods; Conferences; DNA; Evolution (biology); Materials; Proteins; Robustness;
fLanguage
English
Publisher
ieee
Conference_Titel
Bioinformatics and Biomedicine Workshops (BIBMW), 2011 IEEE International Conference on
Conference_Location
Atlanta, GA
Print_ISBN
978-1-4577-1612-6
Type
conf
DOI
10.1109/BIBMW.2011.6112542
Filename
6112542
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