Skull stripping of MRI brain images using mathematical morphology

Skull stripping is a major phase in MRI brain imaging applications and it refers to the removal of its non-cerebral tissues. The main problem in skull-stripping is the segmentation of the non-cerebral and the intracranial tissues due to their homogeneity intensities. As morphology requires prior binarization of the image, this paper proposed mathematical morphology segmentation using double and Otsu´s thresholding. The purpose is to identify robust threshold values to remove the non-cerebral tissue from MRI brain images. Ninety collected samples of T1-weighted, T2-weighted and FLAIR MRI brain images are used in the experiments. The results showed promising use of double threholding as a robust threshold value in handling intensity inhomogeneities compared to Otsu´s thresholding.