Title :
Study on the Relationship between CGTase´s Thermostability and Electrostatic Energy by Molecular Dynamics Simulation
Author :
Fu, Yi ; Ding, Yanrui ; Xu, Wenbo
Author_Institution :
Sch. of Inf. Technol., Jiangnan Univ., Wuxi, China
Abstract :
Cyclodextrin glycosyltransferase (CGTase) (EC 2.4.1.19) is an important industrial enzyme for the production of cyclodextrins. As we know, thermophilic CGTase is more usefully than mesophilic CGTase in industry. There are many factors that affect CGTase thermostability. In all the cases studied, electrostatic interactions are more favorable in the hyperthermophilic proteins. The electrostatic free energy is found not only to be correlated with the number of ionizable amino acid residues, saltbridges or saltbridge networks in a protein, but also depends on the location of these groups within the protein structure. Taken together, electrostatic contributions to the energy of wildtype CGTase and its mutant are calculated. The dynamics of a mutant CGTase in a water environment, as studied by performing molecular dynamics (MD) simulations at various temperatures, is compared to the dynamical behavior of a homologous wildtype protein simulated under identical conditions. Our results suggest that mutant protein enhances electrostatic interactions through mutation of amino acids within the time scale of the simulations. Regime saltbridge interactions provide a stabilizing contribution in particular in the mutant protein in the high temperature. Optimization of electrostatic interactions offers a simple means of enhancing stability without disrupting the core residues characteristic of different protein families. This leads to the conclusion that electrostatic interactions play an important role in determining the stability of protein at high temperatures.
Keywords :
electrostatics; free energy; proteins; CGTase thermostability; amino acid residues; cyclodextrin glycosyltransferase; electrostatic contributions; electrostatic energy; electrostatic free energy; electrostatic interactions; homologous wildtype protein; hyperthermophilic proteins; mesophilic CGTase; molecular dynamics simulation; protein structure; saltbridge networks; thermophilic CGTase; Amino acids; Biochemistry; Electrostatics; Genetic mutations; Hyperthermia; Industrial relations; Production; Proteins; Stability; Temperature;
Conference_Titel :
Information Engineering and Computer Science, 2009. ICIECS 2009. International Conference on
Conference_Location :
Wuhan
Print_ISBN :
978-1-4244-4994-1
DOI :
10.1109/ICIECS.2009.5364911