• DocumentCode
    2949657
  • Title

    A fast DFT based gene prediction algorithm for identification of protein coding regions

  • Author

    Datta, Suprakash ; Asif, Amir

  • Author_Institution
    Dept. of Comput. Sci. & Eng., York Univ., Toronto, Ont., Canada
  • Volume
    5
  • fYear
    2005
  • fDate
    18-23 March 2005
  • Abstract
    The paper provides theoretical justification for the "3-periodicity property" observed in protein coding regions within genomic DNA sequences. We propose a new classification criteria improving upon traditional frequency based approaches for identification of coding regions. Experimental studies indicate superior performance compared with other algorithms that use the 3-periodicity property.
  • Keywords
    DNA; discrete Fourier transforms; genetics; pattern classification; proteins; coding region 3-periodicity property; coding region classification; fast DFT based gene prediction algorithm; genomic DNA sequences; protein coding region identification; Algorithm design and analysis; Binary sequences; Bioinformatics; Computer science; DNA computing; Discrete Fourier transforms; Frequency; Genomics; Prediction algorithms; Protein engineering;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Acoustics, Speech, and Signal Processing, 2005. Proceedings. (ICASSP '05). IEEE International Conference on
  • ISSN
    1520-6149
  • Print_ISBN
    0-7803-8874-7
  • Type

    conf

  • DOI
    10.1109/ICASSP.2005.1416388
  • Filename
    1416388