DocumentCode :
2949657
Title :
A fast DFT based gene prediction algorithm for identification of protein coding regions
Author :
Datta, Suprakash ; Asif, Amir
Author_Institution :
Dept. of Comput. Sci. & Eng., York Univ., Toronto, Ont., Canada
Volume :
5
fYear :
2005
fDate :
18-23 March 2005
Abstract :
The paper provides theoretical justification for the "3-periodicity property" observed in protein coding regions within genomic DNA sequences. We propose a new classification criteria improving upon traditional frequency based approaches for identification of coding regions. Experimental studies indicate superior performance compared with other algorithms that use the 3-periodicity property.
Keywords :
DNA; discrete Fourier transforms; genetics; pattern classification; proteins; coding region 3-periodicity property; coding region classification; fast DFT based gene prediction algorithm; genomic DNA sequences; protein coding region identification; Algorithm design and analysis; Binary sequences; Bioinformatics; Computer science; DNA computing; Discrete Fourier transforms; Frequency; Genomics; Prediction algorithms; Protein engineering;
fLanguage :
English
Publisher :
ieee
Conference_Titel :
Acoustics, Speech, and Signal Processing, 2005. Proceedings. (ICASSP '05). IEEE International Conference on
ISSN :
1520-6149
Print_ISBN :
0-7803-8874-7
Type :
conf
DOI :
10.1109/ICASSP.2005.1416388
Filename :
1416388
Link To Document :
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