Title :
A fast DFT based gene prediction algorithm for identification of protein coding regions
Author :
Datta, Suprakash ; Asif, Amir
Author_Institution :
Dept. of Comput. Sci. & Eng., York Univ., Toronto, Ont., Canada
Abstract :
The paper provides theoretical justification for the "3-periodicity property" observed in protein coding regions within genomic DNA sequences. We propose a new classification criteria improving upon traditional frequency based approaches for identification of coding regions. Experimental studies indicate superior performance compared with other algorithms that use the 3-periodicity property.
Keywords :
DNA; discrete Fourier transforms; genetics; pattern classification; proteins; coding region 3-periodicity property; coding region classification; fast DFT based gene prediction algorithm; genomic DNA sequences; protein coding region identification; Algorithm design and analysis; Binary sequences; Bioinformatics; Computer science; DNA computing; Discrete Fourier transforms; Frequency; Genomics; Prediction algorithms; Protein engineering;
Conference_Titel :
Acoustics, Speech, and Signal Processing, 2005. Proceedings. (ICASSP '05). IEEE International Conference on
Print_ISBN :
0-7803-8874-7
DOI :
10.1109/ICASSP.2005.1416388