Title :
A model of chromosome longitudinal structure
Author_Institution :
Bio-Med. Eng. Center, Bucharest Univ., Romania
Abstract :
Symbolic nucleotide sequences are converted into digital genomic signals by using a complex representation derived from a tetrahedral vector representation of nucleotides. It is shown that, for large scales, the unwrapped phase of such signals is invariant with respect to the inversion of DNA double helix segments, while the cumulated phase is quite conservative for uniformly distributed single nucleotide polymorphisms (SNP). By re-orienting chromosome coding regions, a "hidden" linear variation of the cumulated phase has been revealed, along with the conspicuous almost linear variation of the unwrapped phase. A model of the chromosome longitudinal structure has been inferred on these bases.
Keywords :
DNA; cellular biophysics; genetics; medical signal processing; sequences; DNA double helix segments; chromosome coding regions; chromosome longitudinal structure; cumulated phase; digital genomic signals; symbolic nucleotide sequences; tetrahedral vector representation; uniformly distributed single nucleotide polymorphisms; unwrapped phase; Bioinformatics; Biological cells; DNA; Genomics; Large-scale systems; Microorganisms; Proteins; Sequences; Signal processing; Viruses (medical);
Conference_Titel :
Neural Network Applications in Electrical Engineering, 2004. NEUREL 2004. 2004 7th Seminar on
Print_ISBN :
0-7803-8547-0
DOI :
10.1109/NEUREL.2004.1416560