DocumentCode
2976867
Title
Phylogenetic Analysis of Neuraminidase Genes of H5N1 Isolates using HPC Technologies
Author
Singh, Dadabhai T. ; Trehan, Rahul ; Ray, Pradeep ; Schmidt, Bertil
Author_Institution
Genvea Biosci., Singapore
fYear
2007
fDate
19-22 June 2007
Firstpage
285
Lastpage
288
Abstract
In this paper we present workflows for the phylogenetic analysis of Neuraminidase genes of H5N1 isolates and Influenza viruses using a new workflow design system called Quascade-MP2. We render the packages ClustalW and PHYLIP in a new biologist-friendly workflow system which uses high performance computing in clustered computing environments to accelerate the compute- intensive parts of these workflows.
Keywords
biology computing; genetics; message passing; microorganisms; middleware; parallel processing; software packages; workstation clusters; ClustalW package; H5N1 isolate; HPC technology; PHYLIP package; Quascade-MP2 middleware; biologist-friendly workflow system; clustered computing; influenza virus; neuraminidase genes; phylogenetic analysis; Bioinformatics; Biology computing; Clustering algorithms; Genetics; High performance computing; Influenza; Isolation technology; Performance analysis; Phylogeny; Viruses (medical);
fLanguage
English
Publisher
ieee
Conference_Titel
e-Health Networking, Application and Services, 2007 9th International Conference on
Conference_Location
Taipei
Print_ISBN
1-4244-0942-X
Type
conf
DOI
10.1109/HEALTH.2007.381652
Filename
4265846
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