DocumentCode :
3018522
Title :
Off-Line Scheduling of Divisible Requests on an Heterogeneous Collection of Databanks
Author :
Legrand, Arnaud ; Su, Alan ; Vivien, Frédéric
Author_Institution :
Lab. ID, IMAG, Grenoble, France
fYear :
2005
fDate :
04-08 April 2005
Abstract :
In this paper, we consider the problem of scheduling comparisons of motifs against biological databanks. We experimentally show that this problem lies in the divisible load framework with negligible communication costs. In this framework, we propose a polynomial-time algorithm to optimally solve the maximum weighted flow offline scheduling problem on unrelated machines. We also show how to optimally solve the maximum weighted flow off-line scheduling problem with preemption on unrelated machines.
Keywords :
biology computing; computational complexity; distributed databases; genetics; scheduling; sequences; biological databank; divisible load framework; heterogeneous databank collection; maximum weighted flow offline scheduling problem; polynomial-time algorithm; Bioinformatics; Biological system modeling; Biology computing; Concurrent computing; Databases; Genomics; Polynomials; Processor scheduling; Proteins; Scheduling algorithm;
fLanguage :
English
Publisher :
ieee
Conference_Titel :
Parallel and Distributed Processing Symposium, 2005. Proceedings. 19th IEEE International
Print_ISBN :
0-7695-2312-9
Type :
conf
DOI :
10.1109/IPDPS.2005.301
Filename :
1419954
Link To Document :
بازگشت