• DocumentCode
    3025491
  • Title

    Parallel Scale-Transfer in Multiscale MD-FE Coupling Using Remote Memory Access

  • Author

    Krause, Dorian ; Krause, Rolf

  • Author_Institution
    Inst. of Comput. Sci., Univ. delta Svizzera italiana, Lugano, Switzerland
  • fYear
    2011
  • fDate
    5-8 Dec. 2011
  • Firstpage
    66
  • Lastpage
    73
  • Abstract
    We present a novel remote memory access based approach to the parallelization of a coupled Molecular Dynamics-Finite Element (MD/FE) code and its implementation. Such multiscale simulation codes can be used for, e.g., the simulation of localized nonlinear phenomena as fracture in solids. Caused by the dynamic data distribution of MD codes this requires non-standard communication mechanisms. We investigate different implementation options for realizing the scale transfer between MD and FE in parallel. We present benchmark results obtained on three different parallel architectures which give interesting insights into the performance of our new approach. Additionally, we study the scaling of a full coupled code. To the best of our knowledge, these results are the first available scaling results for this kind of heterogeneous code.
  • Keywords
    digital simulation; file organisation; finite element analysis; fracture mechanics; mechanical engineering computing; molecular dynamics method; parallel processing; dynamic data distribution; localized nonlinear phenomena; molecular dynamics finite element code; multiscale MD-FE coupling; multiscale simulation codes; parallel architectures; parallel scale transfer; remote memory access; solid fracture; Arrays; Computational modeling; Couplings; Finite element methods; Indexes; Iron; Vectors; Fracture Mechanics; Global Array; MPI; Multiscale Coupling; Remote Memory Access;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    e-Science Workshops (eScienceW), 2011 IEEE Seventh International Conference on
  • Conference_Location
    Stockholm
  • Print_ISBN
    978-1-4673-0026-1
  • Type

    conf

  • DOI
    10.1109/eScienceW.2011.8
  • Filename
    6130733