Title :
Parallel Scale-Transfer in Multiscale MD-FE Coupling Using Remote Memory Access
Author :
Krause, Dorian ; Krause, Rolf
Author_Institution :
Inst. of Comput. Sci., Univ. delta Svizzera italiana, Lugano, Switzerland
Abstract :
We present a novel remote memory access based approach to the parallelization of a coupled Molecular Dynamics-Finite Element (MD/FE) code and its implementation. Such multiscale simulation codes can be used for, e.g., the simulation of localized nonlinear phenomena as fracture in solids. Caused by the dynamic data distribution of MD codes this requires non-standard communication mechanisms. We investigate different implementation options for realizing the scale transfer between MD and FE in parallel. We present benchmark results obtained on three different parallel architectures which give interesting insights into the performance of our new approach. Additionally, we study the scaling of a full coupled code. To the best of our knowledge, these results are the first available scaling results for this kind of heterogeneous code.
Keywords :
digital simulation; file organisation; finite element analysis; fracture mechanics; mechanical engineering computing; molecular dynamics method; parallel processing; dynamic data distribution; localized nonlinear phenomena; molecular dynamics finite element code; multiscale MD-FE coupling; multiscale simulation codes; parallel architectures; parallel scale transfer; remote memory access; solid fracture; Arrays; Computational modeling; Couplings; Finite element methods; Indexes; Iron; Vectors; Fracture Mechanics; Global Array; MPI; Multiscale Coupling; Remote Memory Access;
Conference_Titel :
e-Science Workshops (eScienceW), 2011 IEEE Seventh International Conference on
Conference_Location :
Stockholm
Print_ISBN :
978-1-4673-0026-1
DOI :
10.1109/eScienceW.2011.8