Title :
Leveraging genetic algorithm and neural network in automated protein crystal recognition
Author :
Po, Ming Jack ; Laine, Andrew F.
Author_Institution :
Department of Biomedical Engineering, Columbia University, New York, 10027 USA
Abstract :
We propose a classification framework combined with a multi-scale image processing method for recognizing protein crystals in high-throughput images. The main three points of the processing method are the multiple population genetic algorithm for region of interest detection, multi-scale Laplacian pyramid filters and histogram analysis techniques to find an effective feature vector. Using human (expert crystallographers) classified images as ground truth, the current experimental results gave 88% true positive and 99% true negative rates, resulting in an average true performance of ∼93.5% validated on an image database which contained over 79,000 images.
Keywords :
Algorithm design and analysis; Crystals; Filters; Genetic algorithms; Histograms; Image processing; Image recognition; Laplace equations; Neural networks; Proteins; Algorithms; Biomedical Engineering; Crystallization; Expert Testimony; Neural Networks (Computer); Proteins; Software Design;
Conference_Titel :
Engineering in Medicine and Biology Society, 2008. EMBS 2008. 30th Annual International Conference of the IEEE
Conference_Location :
Vancouver, BC
Print_ISBN :
978-1-4244-1814-5
Electronic_ISBN :
1557-170X
DOI :
10.1109/IEMBS.2008.4649564