DocumentCode
3106800
Title
CADViST: Visualization Tool for BLAST Alignment of Dengue Virus Sequences
Author
Viriyasaksathian, Boonyarat ; Wongsawat, Yodchanan ; Suriyaphol, Prapat
Author_Institution
Dept. of Biomed. Eng., Mahidol Univ., Nakornpathom, Thailand
fYear
2010
fDate
18-20 June 2010
Firstpage
1
Lastpage
4
Abstract
Exploration of the search engine that can simultaneously visualize the genomic sequences is one of the challenging problems. In this paper, we propose the software, called CADViST. The UnitX graphical representation (previously proposed by the authors) is employed as the alternative tool to visualize the result obtained from the Basic Local Alignment Search Tool (BLAST). The proposed software can efficiently help the users/experts to easily interpret the results, especially in Dengue virus sequence analysis where different serotypes or subtypes need to be distinguished.
Keywords
bioinformatics; data visualisation; genomics; microorganisms; molecular biophysics; search engines; software tools; BLAST; CADViST; UnitX graphical representation; basic local alignment search tool; bioinformatics; dengue virus sequence; genomic sequence; visualization tool; Bioinformatics; Biomedical engineering; DNA; Data visualization; Discrete Fourier transforms; Displays; Fourier transforms; Genomics; Sequences; Spectrogram;
fLanguage
English
Publisher
ieee
Conference_Titel
Bioinformatics and Biomedical Engineering (iCBBE), 2010 4th International Conference on
Conference_Location
Chengdu
ISSN
2151-7614
Print_ISBN
978-1-4244-4712-1
Electronic_ISBN
2151-7614
Type
conf
DOI
10.1109/ICBBE.2010.5515779
Filename
5515779
Link To Document