Title :
Similarities Of DNA sequences based on 3D chaos game representation
Author :
Huang, Hailan ; Shi, Long
Author_Institution :
Sch. of Math. & Comput. Sci., Xiangtan Univ., Xiangtan, China
Abstract :
Based on 3D chaos game representation of DNA sequence, we obtain four characteristic curves. The geometrical centers and mean deviation of four curves have been grouped into a sixteen-component vector to represent the DNA sequence. The Euclidean distances among introduced vectors are applied to characterize and compare the coding sequences of the first exon of beta globin gene of 11 different species.
Keywords :
DNA; chaos; 3D chaos game representation; DNA sequences; Euclidean distances; beta globin gene; geometrical centers; mean deviation; Chaos; DNA; Encoding; Games; Humans; Mice; Three dimensional displays; chaos game representation; characteristic curve; geometrical center; mean deviation; similarity;
Conference_Titel :
Biomedical Engineering and Informatics (BMEI), 2010 3rd International Conference on
Conference_Location :
Yantai
Print_ISBN :
978-1-4244-6495-1
DOI :
10.1109/BMEI.2010.5639720
