DocumentCode :
3179205
Title :
Similar subsequence retrieval from two time series data using homology search
Author :
Nishii, Takuma ; Hiroyasu, Tomoyuki ; Yoshimi, Masato ; Miki, Mitsunori ; Yokouchi, Hisatake
Author_Institution :
Grad. Sch. of Eng., Doshisha Univ., Kyoto, Japan
fYear :
2010
fDate :
10-13 Oct. 2010
Firstpage :
1062
Lastpage :
1067
Abstract :
We propose a method for extracting the most similar subsequences from two time series data by quantizing them and performing a homology search. The homology searches, such as BLAST and SW, are string search algorithms. Therefore, time series data should be quantized. SAX and EIAD were applied as quantization methods, and their effectiveness was examined by experiment. According to the experiments, time series data sets were classified into four types of time series data set, and we discuss the characteristics of SAX and EIAD.
Keywords :
bioinformatics; data handling; information retrieval; time series; EIAD; SAX; homology search; quantization methods; similar subsequence retrieval; string search algorithms; time series data; Biology; Homology Search; Requantization; Similarity Search; Smith-Waterman Algorithm; Time Series Data;
fLanguage :
English
Publisher :
ieee
Conference_Titel :
Systems Man and Cybernetics (SMC), 2010 IEEE International Conference on
Conference_Location :
Istanbul
ISSN :
1062-922X
Print_ISBN :
978-1-4244-6586-6
Type :
conf
DOI :
10.1109/ICSMC.2010.5641809
Filename :
5641809
Link To Document :
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