• DocumentCode
    3199706
  • Title

    Prediction of hot regions in protein-protein interactions based on complex network and community detection

  • Author

    Dongfang Nan ; Xiaolong Zhang

  • Author_Institution
    Hubei Province Key Lab. of Intell. Inf. Process. & Real-time Ind. Syst., Wuhan Univ. of Sci. & Technol., Wuhan, China
  • fYear
    2013
  • fDate
    18-21 Dec. 2013
  • Firstpage
    17
  • Lastpage
    23
  • Abstract
    In the protein-protein interactions (PPI), hot regions are the key factor to maintain metabolism and the cause of disease. The conformation and prediction of the hot regions effectively is a worth researching topics. This paper proposes a prediction method of hot regions based on complex network and community detection. In the prediction process, a hotspots retrieving strategy is used to exploit false positive (FP) and false negative (FN) residues, and these FP and FN residues achieved from the previous hotspots prediction. The method has advantage to identify hot regions in PPI, and experimental results show that the method not only improves the prediction accuracy of hot regions, but also has more reliability.
  • Keywords
    complex networks; diseases; molecular biophysics; molecular configurations; proteins; FN residues; FP residues; PPI network; community detection; complex network; disease; false negative residues; false positive residues; hotspot retrieving strategy; metabolism; prediction method; protein conformation; protein-protein interactions; Accuracy; Communities; Complex networks; Educational institutions; Prediction algorithms; Proteins; Testing; Community detection; Complex network; Hot region; Protein-protein interactions; Residues network;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Bioinformatics and Biomedicine (BIBM), 2013 IEEE International Conference on
  • Conference_Location
    Shanghai
  • Type

    conf

  • DOI
    10.1109/BIBM.2013.6732712
  • Filename
    6732712