DocumentCode :
3199706
Title :
Prediction of hot regions in protein-protein interactions based on complex network and community detection
Author :
Dongfang Nan ; Xiaolong Zhang
Author_Institution :
Hubei Province Key Lab. of Intell. Inf. Process. & Real-time Ind. Syst., Wuhan Univ. of Sci. & Technol., Wuhan, China
fYear :
2013
fDate :
18-21 Dec. 2013
Firstpage :
17
Lastpage :
23
Abstract :
In the protein-protein interactions (PPI), hot regions are the key factor to maintain metabolism and the cause of disease. The conformation and prediction of the hot regions effectively is a worth researching topics. This paper proposes a prediction method of hot regions based on complex network and community detection. In the prediction process, a hotspots retrieving strategy is used to exploit false positive (FP) and false negative (FN) residues, and these FP and FN residues achieved from the previous hotspots prediction. The method has advantage to identify hot regions in PPI, and experimental results show that the method not only improves the prediction accuracy of hot regions, but also has more reliability.
Keywords :
complex networks; diseases; molecular biophysics; molecular configurations; proteins; FN residues; FP residues; PPI network; community detection; complex network; disease; false negative residues; false positive residues; hotspot retrieving strategy; metabolism; prediction method; protein conformation; protein-protein interactions; Accuracy; Communities; Complex networks; Educational institutions; Prediction algorithms; Proteins; Testing; Community detection; Complex network; Hot region; Protein-protein interactions; Residues network;
fLanguage :
English
Publisher :
ieee
Conference_Titel :
Bioinformatics and Biomedicine (BIBM), 2013 IEEE International Conference on
Conference_Location :
Shanghai
Type :
conf
DOI :
10.1109/BIBM.2013.6732712
Filename :
6732712
Link To Document :
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