Title :
Parallel Implementation of a Computational Model of the HIS Using OpenMP and MPI
Author :
Pigozzo, Alexandre Bittencourt ; Lobosco, Marcelo ; Santos, Rodrigo Weber dos
Author_Institution :
Mestrado em Modelagem Comput., Univ. Fed. de Juiz de Fora, Juiz de Fora, Brazil
Abstract :
Primary immune responses are initiated when foreign pathogenic microorganisms move past the front-line defense system of the body. The primary immune responses consist of a) the production of antibody molecules that are specific for the pathogenic microorganism and b) the expansion and differentiation of special-purpose defensive cells, the lymphocytes. In this scenario, our work aims to develop and implement a mathematical and computational model for this primary immune response in a microscopic section of a tissue. However, solving the set of equations related to the mathematical model requires a large amount of computation. Therefore, in this work we present an initial attempt to improve the performance of the computational implementation via the use of parallel computing.
Keywords :
application program interfaces; artificial immune systems; biology computing; cellular biophysics; message passing; microorganisms; open systems; parallel processing; HIS; MPI; OpenMP; antibody molecules; computational model; foreign pathogenic microorganisms; front-line defense system; lymphocytes; mathematical model; parallel computing; primary immune responses; special-purpose defensive cells; Computational modeling; Equations; Immune system; Mathematical model; Message systems; Microorganisms; Numerical models; Computational Model; Human Immune System; Mathematical Model; Parallel Computing;
Conference_Titel :
Computer Architecture and High Performance Computing Workshops (SBAC-PADW), 2010 22nd International Symposium on
Conference_Location :
Petropolis
Print_ISBN :
978-1-4244-8877-3
Electronic_ISBN :
978-0-7695-4276-8
DOI :
10.1109/SBAC-PADW.2010.12