DocumentCode
3223931
Title
Parallel Implementations of an Immune Network Model Using POSIX Threads and OpenMP
Author
Caldas, Daniel M. ; de Barros, B.G. ; Lobosco, Marcelo
Author_Institution
Lab. of Comput. Physiol. & High-Performance Comput., Univ. Fed. de Juiz de Fora, Juiz de Fora, Brazil
fYear
2010
fDate
27-30 Oct. 2010
Firstpage
61
Lastpage
66
Abstract
In the last few years, there has been an increasing interest in the mathematical and computational modeling of the human immune system (HIS). In particular, the use of computational models is fundamental to understand the HIS dynamics. The availability of computational models on which to do experiments and to test new hypothesis would accelerate our understanding of the HIS, allowing us to develop new drugs against many diseases. In this scenario we extended, in a previous work, a computational model of the HIS that represents the behavior of two of its cells, the B and T lymphocytes, in distinct situations. In this paper we present a parallel implementation of the model, developed in order to reduce the computational time needed in the simulations. We also describe the techniques used in the implementation of the parallel model, evaluates its performance, and discuss the initial results that have been obtained.
Keywords
Unix; biophysics; parallel programming; B lymphocytes; OpenMP; POSIX thread; T lymphocytes; computational modeling; human immune system; immune network model; mathematical modeling; parallel implementation; parallel model; Adaptive systems; Bismuth; Computational modeling; Equations; Immune system; Instruction sets; Mathematical model; Computational Modeling; Human Immune System; Parallel Computing;
fLanguage
English
Publisher
ieee
Conference_Titel
Computer Architecture and High Performance Computing Workshops (SBAC-PADW), 2010 22nd International Symposium on
Conference_Location
Petropolis
Print_ISBN
978-1-4244-8877-3
Electronic_ISBN
978-0-7695-4276-8
Type
conf
DOI
10.1109/SBAC-PADW.2010.14
Filename
5644920
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