• DocumentCode
    3223931
  • Title

    Parallel Implementations of an Immune Network Model Using POSIX Threads and OpenMP

  • Author

    Caldas, Daniel M. ; de Barros, B.G. ; Lobosco, Marcelo

  • Author_Institution
    Lab. of Comput. Physiol. & High-Performance Comput., Univ. Fed. de Juiz de Fora, Juiz de Fora, Brazil
  • fYear
    2010
  • fDate
    27-30 Oct. 2010
  • Firstpage
    61
  • Lastpage
    66
  • Abstract
    In the last few years, there has been an increasing interest in the mathematical and computational modeling of the human immune system (HIS). In particular, the use of computational models is fundamental to understand the HIS dynamics. The availability of computational models on which to do experiments and to test new hypothesis would accelerate our understanding of the HIS, allowing us to develop new drugs against many diseases. In this scenario we extended, in a previous work, a computational model of the HIS that represents the behavior of two of its cells, the B and T lymphocytes, in distinct situations. In this paper we present a parallel implementation of the model, developed in order to reduce the computational time needed in the simulations. We also describe the techniques used in the implementation of the parallel model, evaluates its performance, and discuss the initial results that have been obtained.
  • Keywords
    Unix; biophysics; parallel programming; B lymphocytes; OpenMP; POSIX thread; T lymphocytes; computational modeling; human immune system; immune network model; mathematical modeling; parallel implementation; parallel model; Adaptive systems; Bismuth; Computational modeling; Equations; Immune system; Instruction sets; Mathematical model; Computational Modeling; Human Immune System; Parallel Computing;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Computer Architecture and High Performance Computing Workshops (SBAC-PADW), 2010 22nd International Symposium on
  • Conference_Location
    Petropolis
  • Print_ISBN
    978-1-4244-8877-3
  • Electronic_ISBN
    978-0-7695-4276-8
  • Type

    conf

  • DOI
    10.1109/SBAC-PADW.2010.14
  • Filename
    5644920