DocumentCode :
3281514
Title :
Prediction of protein coding regions by combining Fourier and Wavelet Transform
Author :
Deng, Suping ; Chen, Zidan ; Ding, Guohui ; Yixue Li
Author_Institution :
Sch. of Life Sci. & Technol., Tongji Univ., Shanghai, China
Volume :
9
fYear :
2010
fDate :
16-18 Oct. 2010
Firstpage :
4113
Lastpage :
4117
Abstract :
Identifying protein coding regions in DNA sequences is an important step in the location of genes. The major signal in protein coding regions for most of genomic sequences is three-base periodicity. This paper proposed a Fourier-Wavelet-based method to predict protein coding regions based on the previous Fourier-based predictor. The validity of this approach is verified by a great deal of research results from theoretical analysis and experiments. Sensitivity´s increase and specificity´s decrease demonstrate the efficacy of the proposed predictor.
Keywords :
Fourier transforms; biology computing; medical signal processing; wavelet transforms; DNA sequences; Fourier transform; Fourier-based predictor; gene location; genomic sequences; protein coding region prediction; three-base periodicity; wavelet transform; Bioinformatics; DNA; Encoding; Genomics; Proteins; Wavelet transforms; CDS prediction; Fourier Transform; Wavelet Transform; three-base periodicity;
fLanguage :
English
Publisher :
ieee
Conference_Titel :
Image and Signal Processing (CISP), 2010 3rd International Congress on
Conference_Location :
Yantai
Print_ISBN :
978-1-4244-6513-2
Type :
conf
DOI :
10.1109/CISP.2010.5648065
Filename :
5648065
Link To Document :
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