DocumentCode
3281514
Title
Prediction of protein coding regions by combining Fourier and Wavelet Transform
Author
Deng, Suping ; Chen, Zidan ; Ding, Guohui ; Yixue Li
Author_Institution
Sch. of Life Sci. & Technol., Tongji Univ., Shanghai, China
Volume
9
fYear
2010
fDate
16-18 Oct. 2010
Firstpage
4113
Lastpage
4117
Abstract
Identifying protein coding regions in DNA sequences is an important step in the location of genes. The major signal in protein coding regions for most of genomic sequences is three-base periodicity. This paper proposed a Fourier-Wavelet-based method to predict protein coding regions based on the previous Fourier-based predictor. The validity of this approach is verified by a great deal of research results from theoretical analysis and experiments. Sensitivity´s increase and specificity´s decrease demonstrate the efficacy of the proposed predictor.
Keywords
Fourier transforms; biology computing; medical signal processing; wavelet transforms; DNA sequences; Fourier transform; Fourier-based predictor; gene location; genomic sequences; protein coding region prediction; three-base periodicity; wavelet transform; Bioinformatics; DNA; Encoding; Genomics; Proteins; Wavelet transforms; CDS prediction; Fourier Transform; Wavelet Transform; three-base periodicity;
fLanguage
English
Publisher
ieee
Conference_Titel
Image and Signal Processing (CISP), 2010 3rd International Congress on
Conference_Location
Yantai
Print_ISBN
978-1-4244-6513-2
Type
conf
DOI
10.1109/CISP.2010.5648065
Filename
5648065
Link To Document