• DocumentCode
    3281514
  • Title

    Prediction of protein coding regions by combining Fourier and Wavelet Transform

  • Author

    Deng, Suping ; Chen, Zidan ; Ding, Guohui ; Yixue Li

  • Author_Institution
    Sch. of Life Sci. & Technol., Tongji Univ., Shanghai, China
  • Volume
    9
  • fYear
    2010
  • fDate
    16-18 Oct. 2010
  • Firstpage
    4113
  • Lastpage
    4117
  • Abstract
    Identifying protein coding regions in DNA sequences is an important step in the location of genes. The major signal in protein coding regions for most of genomic sequences is three-base periodicity. This paper proposed a Fourier-Wavelet-based method to predict protein coding regions based on the previous Fourier-based predictor. The validity of this approach is verified by a great deal of research results from theoretical analysis and experiments. Sensitivity´s increase and specificity´s decrease demonstrate the efficacy of the proposed predictor.
  • Keywords
    Fourier transforms; biology computing; medical signal processing; wavelet transforms; DNA sequences; Fourier transform; Fourier-based predictor; gene location; genomic sequences; protein coding region prediction; three-base periodicity; wavelet transform; Bioinformatics; DNA; Encoding; Genomics; Proteins; Wavelet transforms; CDS prediction; Fourier Transform; Wavelet Transform; three-base periodicity;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Image and Signal Processing (CISP), 2010 3rd International Congress on
  • Conference_Location
    Yantai
  • Print_ISBN
    978-1-4244-6513-2
  • Type

    conf

  • DOI
    10.1109/CISP.2010.5648065
  • Filename
    5648065