Title :
Mining the Bioinformation of Differentially Expressed Genes in Lung Treated with the Hypoxia Based on the Bioinformatics Methods
Author :
Zhou, Cuihong ; Deng, Xiaoyan ; Zhou, Jun ; Bi, De ; Xiao, Huajun
Author_Institution :
Sch. of Biol. Sci. & Med. Eng., Beihang Univ. (BUAA), Beijing, China
Abstract :
Objective: To analyze the differentially expressed genes expressed genes in human pulmonary microvascular endothelial cells (HMVEC-L) that cultured in hypoxia environment for getting better understanding of the molecular characteristics caused by hypoxia. Methods: Got the microarray hybridization data from the Gene Expression Omnibus (GEO) database. Identified the differentially expressed genes expressed genes in hypoxic HMVEC-L and the patterns of their regulation using public bioinformatics software and database, which involved BRB-Arraytools, Genecodis, GO and KEGG. Results and Conclusion: These data mining findings between normal and hypoxic HMVEC-L by bioinformatics methods could provide better understanding of the molecular activity change caused by hypoxia.
Keywords :
bioinformatics; data mining; database management systems; genetics; lung; molecular biophysics; patient treatment; BRB-Arraytools; GEO database; Genecodis; KEGG; bioinformation mining; data mining; differentially expressed genes; gene expression omnibus; human pulmonary microvascular endothelial cell; hypoxic HMVEC-L; lungs; microarray hybridization data; public bioinformatics database; public bioinformatics software; Bioinformatics; Cancer; Data mining; Gene expression; Genomics; Proteins;
Conference_Titel :
Bioinformatics and Biomedical Engineering, (iCBBE) 2011 5th International Conference on
Conference_Location :
Wuhan
Print_ISBN :
978-1-4244-5088-6
DOI :
10.1109/icbbe.2011.5780176