Title :
RNA-Seq UD: A bioinformatics plattform for RNA-Seq analysis
Author :
Ramirez, Miguel ; Rojas-Quintero, Cristian Alejandro ; Vera-Parra, Nelson Enrique
Author_Institution :
Grupo de Investig. GICOGE, Univ. Distrital Francisco Jose de Caldas, Bogota, Colombia
Abstract :
In this work is presented a process of design and building of a software that gather the tools required for a RNA-Seq data bioinformatics research. From the proposed a workflow is proposed that represents all a process that goes through the main stages of the treatment of transcriptomic and next generation sequencing data, such as preprocessing, mapping, assembly, annotation, and differential expression; Creating a platform of integral works and user-friendly that facilitates the work of researchers in the transcriptomic area.
Keywords :
RNA; bioinformatics; software engineering; RNA-Seq UD analysis; bioinformatics platform; next generation sequencing data; software design; transcriptomic treatment; Assembly; Bioinformatics; Genomics; Sequential analysis; Software; Bioinformatics; Next Generation Sequencing; Transcriptomics;
Conference_Titel :
Information Systems and Technologies (CISTI), 2015 10th Iberian Conference on
Conference_Location :
Aveiro
DOI :
10.1109/CISTI.2015.7170565