DocumentCode
3350691
Title
Gaussian mixture models for spots in microscopy using a new split/merge em algorithm
Author
Pan, Kangyu ; Kokaram, Anil ; Hillebrand, Jens ; Ramaswami, Mani
Author_Institution
Dept. of Electron. & Electr. Eng., Trinity Coll. Dublin, Dublin, Ireland
fYear
2010
fDate
26-29 Sept. 2010
Firstpage
3645
Lastpage
3648
Abstract
In confocal microscopy imaging, target objects are labeled with fluorescent markers in the living specimen, and usually appear as spots in the observed images. Spot detection and analysis is therefore an important task but it is still heavily reliant on manual analysis. In this paper, a novel shape modeling algorithm is proposed for automating the detection and analysis of the spots of interest. The algorithm exploits a Gaussian mixture model to characterize the spatial intensity distribution of the spots, and estimates parameters using a novel split-and-merge expectation maximization (SMEM) algorithm. In previous work the split step is random which is an issue for biological analysis where repeatability is important. The new split/merge steps are deterministic, hence more useful, and further do not impact adversely on the optimality of the final result.
Keywords
Gaussian processes; biology computing; expectation-maximisation algorithm; microscopy; object detection; Gaussian mixture models; biological analysis; confocal microscopy imaging; fluorescent markers; shape modeling; spatial intensity distribution; split-and-merge expectation maximization algorithm; split/merge EM algorithm; spot analysis; spot detection; target objects; Artificial neural networks; Brightness; Estimation; Microscopy; Pixel; Proteins; Shape; Gaussian mixture model; mRNA; shape modeling; split-and-merge EM algorithm; spot analysis;
fLanguage
English
Publisher
ieee
Conference_Titel
Image Processing (ICIP), 2010 17th IEEE International Conference on
Conference_Location
Hong Kong
ISSN
1522-4880
Print_ISBN
978-1-4244-7992-4
Electronic_ISBN
1522-4880
Type
conf
DOI
10.1109/ICIP.2010.5652472
Filename
5652472
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