• DocumentCode
    3350691
  • Title

    Gaussian mixture models for spots in microscopy using a new split/merge em algorithm

  • Author

    Pan, Kangyu ; Kokaram, Anil ; Hillebrand, Jens ; Ramaswami, Mani

  • Author_Institution
    Dept. of Electron. & Electr. Eng., Trinity Coll. Dublin, Dublin, Ireland
  • fYear
    2010
  • fDate
    26-29 Sept. 2010
  • Firstpage
    3645
  • Lastpage
    3648
  • Abstract
    In confocal microscopy imaging, target objects are labeled with fluorescent markers in the living specimen, and usually appear as spots in the observed images. Spot detection and analysis is therefore an important task but it is still heavily reliant on manual analysis. In this paper, a novel shape modeling algorithm is proposed for automating the detection and analysis of the spots of interest. The algorithm exploits a Gaussian mixture model to characterize the spatial intensity distribution of the spots, and estimates parameters using a novel split-and-merge expectation maximization (SMEM) algorithm. In previous work the split step is random which is an issue for biological analysis where repeatability is important. The new split/merge steps are deterministic, hence more useful, and further do not impact adversely on the optimality of the final result.
  • Keywords
    Gaussian processes; biology computing; expectation-maximisation algorithm; microscopy; object detection; Gaussian mixture models; biological analysis; confocal microscopy imaging; fluorescent markers; shape modeling; spatial intensity distribution; split-and-merge expectation maximization algorithm; split/merge EM algorithm; spot analysis; spot detection; target objects; Artificial neural networks; Brightness; Estimation; Microscopy; Pixel; Proteins; Shape; Gaussian mixture model; mRNA; shape modeling; split-and-merge EM algorithm; spot analysis;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Image Processing (ICIP), 2010 17th IEEE International Conference on
  • Conference_Location
    Hong Kong
  • ISSN
    1522-4880
  • Print_ISBN
    978-1-4244-7992-4
  • Electronic_ISBN
    1522-4880
  • Type

    conf

  • DOI
    10.1109/ICIP.2010.5652472
  • Filename
    5652472