• DocumentCode
    3364766
  • Title

    FPGA implementation of a “dynamic-clamp” system

  • Author

    Bast, Walter ; Dellavale, Damián ; Bonetto, Fabián

  • Author_Institution
    Cavitation & Biotechnol. Lab., CONICET, Río Negro, Argentina
  • fYear
    2011
  • fDate
    13-15 April 2011
  • Firstpage
    167
  • Lastpage
    172
  • Abstract
    The dynamic-clamp electrophysiological technique allows the mimicking of the electrical effects of ion channels embedded into the membrane of an intracellularly recorded cell. Dynamic-clamp relies on the establishing of a loop between the injected current and the recorded membrane potential. In this work, a real-time dynamic-clamp system was implemented on a Field Programmable Gate Array (FPGA). The system proposed allows the concurrent controlling of the activation of several ion channels. The architecture of the instrument developed is based on two main modules: a state machine (as the logic arbiter) with the ADC and DAC interface, and a signal processing module. The state machine controls the converters along with the serial data-transfer interface (SPI). The signal processing module implements the algorithms needed to mimic several HH-type ion channel conductances. Extensive simulations of the device operation were made, showing that the instrument developed implements effectively the dynamic-clamp control loop, with a maximum operation frequency of 532 kHZ. The main application of this instrument is the manipulation of ion channels.
  • Keywords
    asynchronous circuits; bioelectric phenomena; clamps; field programmable gate arrays; finite state machines; signal processing; ADC; DAC; FPGA; HH-type ion channel conductances; dynamic-clamp control loop; dynamic-clamp electrophysiological technique; dynamic-clamp system; field programmable gate array; ion channels; logic arbiter; signal processing module; state machine; Biomembranes; Computer architecture; Field programmable gate arrays; Mathematical model; Neurons; Signal processing algorithms; Voltage measurement;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Programmable Logic (SPL), 2011 VII Southern Conference on
  • Conference_Location
    Cordoba
  • Print_ISBN
    978-1-4244-8847-6
  • Type

    conf

  • DOI
    10.1109/SPL.2011.5782643
  • Filename
    5782643