• DocumentCode
    3388219
  • Title

    Signal Processing Techniques and Statistics for the Analysis of Human Genome Associated with Behavior Abnormalities

  • Author

    Alqallaf, Abdullah K. ; Tewfik, Ahmed H.

  • Author_Institution
    Department of Electrical and Computer Engineering, University of Minnesota, 200 Union Street. SE, Minneapolis, MN 55455, USA. alqal001@umn.edu
  • fYear
    2007
  • fDate
    26-29 Aug. 2007
  • Firstpage
    36
  • Lastpage
    38
  • Abstract
    Almost all human genetic diseases such as cancers and developmental abnormalities are characterized by the presence of genetic variations. Microrray-based Comparative Genomic Hybridization techniques are used to map and measure DNA copy number variations with high-resolution. However, the observed copy numbers are corrupted by noise, making variations breakpoints hard to detect. In this paper, we provide a framework for the analysis of copy number datasets and it is divided into two parts. In the first part, we propose a novel image processing technique to analyze copy number variations based on extended version of Sigma filter algorithm as pre-processing technique. In the second part, we provide statistical searching model for classifying nonrandom genomic variations across multiple samples. Finally, we provide simulated and real data samples to study this effect.
  • Keywords
    Bioinformatics; Cancer; DNA; Diseases; Genetics; Genomics; Humans; Signal analysis; Signal processing; Statistical analysis; Comparative Genomic Hybridization; Copy number variations; Edge-preserving; Smoothing; multiple samples;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Statistical Signal Processing, 2007. SSP '07. IEEE/SP 14th Workshop on
  • Conference_Location
    Madison, WI, USA
  • Print_ISBN
    978-1-4244-1198-6
  • Electronic_ISBN
    978-1-4244-1198-6
  • Type

    conf

  • DOI
    10.1109/SSP.2007.4301213
  • Filename
    4301213