• DocumentCode
    3394679
  • Title

    Data synthesis and tool development for exploring imaging genomic patterns

  • Author

    Kim, Sungeun ; Shen, Li ; Saykin, Andrew J. ; West, John D.

  • Author_Institution
    Sch. of Med., Dept. of Radiol., Indiana Univ., Indianapolis, IN
  • fYear
    2009
  • fDate
    March 30 2009-April 2 2009
  • Firstpage
    298
  • Lastpage
    305
  • Abstract
    Recent advances in brain imaging and high throughput genotyping techniques enable new approaches to study the influence of genetic variation on brain structure and function. However, major computational challenges are bottlenecks for comprehensive joint analysis of these high-dimensional image and genomic data. We report our initial progress in developing an imaging genomic browsing system for integrated exploration of neuroimaging and genomic data. We describe a method for synthesizing a set of realistic neuroimaging and genomic data, where the relationships between imaging phenotypes and genotypes are known. This data set is used to demonstrate the functionality of our system, which is designed for effectively exploring the neuroanatomical distribution of statistical results that measure the associations between brain imaging phenotypes and genotypes on a genome-wide scale. The proposed system has substantial potential for enabling discovery of important imaging genomic associations through visual evaluation and can be extended towards several directions.
  • Keywords
    biology computing; biomedical MRI; data mining; genomics; neurophysiology; pattern recognition; visual databases; brain function; brain imaging genotypes; brain imaging phenotypes; brain structure; data synthesis; genetic variation effects; genomic pattern imaging; high dimensional genomic data; high dimensional image data; high throughput genotyping techniques; imaging genomic associations; imaging genomic browsing system; neuroanatomy; neuroimaging data; single nucleotide polymorphism; tool development; Bioinformatics; Brain; Data visualization; Diffusion tensor imaging; Genetics; Genomics; Image analysis; Magnetic resonance imaging; Neuroimaging; Throughput;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Computational Intelligence in Bioinformatics and Computational Biology, 2009. CIBCB '09. IEEE Symposium on
  • Conference_Location
    Nashville, TN
  • Print_ISBN
    978-1-4244-2756-7
  • Type

    conf

  • DOI
    10.1109/CIBCB.2009.4925742
  • Filename
    4925742