DocumentCode :
3412485
Title :
A simple algorithm for gene prediction with improved noise suppression
Author :
Shakya, D.K. ; Saxena, Rajiv ; Sharma, S.N.
Author_Institution :
Dept. of Biomed. Eng., Samrat Ashok Technol. Inst., Vidisha, India
fYear :
2010
fDate :
24-28 Oct. 2010
Firstpage :
1
Lastpage :
4
Abstract :
A simple algorithm to improvise the identification of protein coding regions in DNA sequences by period-3 property is presented. Background noise present in the period-3 DNA spectrum has been captured using DFT and notch filter. Elimination of this noise from the DNA spectrum improvised the detection of protein coding regions. Algorithm is data independent as it does not requires the empirical determination of any parameter for increasing the discrimination between coding and non-coding regions of a DNA sequence. An improvement in the global accuracy over the DFT and recently reported boosting approach is observed.
Keywords :
discrete Fourier transforms; image sequences; notch filters; proteins; DFT; DNA sequence; gene prediction; noise suppression; notch filter; protein coding; Bioinformatics; DNA; Discrete Fourier transforms; Encoding; Genomics; Noise; Signal processing algorithms; DFT; DNA; Genomic Signal Processing; IIR Digital Filters; Period-3 property; Protein coding regions;
fLanguage :
English
Publisher :
ieee
Conference_Titel :
Signal Processing (ICSP), 2010 IEEE 10th International Conference on
Conference_Location :
Beijing
Print_ISBN :
978-1-4244-5897-4
Type :
conf
DOI :
10.1109/ICOSP.2010.5656361
Filename :
5656361
Link To Document :
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