• DocumentCode
    3452763
  • Title

    Spatial index and visualization of protein structure

  • Author

    Hui Li ; Chunmei Liu ; Burge, Legand ; Southerland, W.

  • Author_Institution
    Dept. of Syst. & Comput. Sci., Howard Univ., Washington, DC, USA
  • fYear
    2012
  • fDate
    4-7 Oct. 2012
  • Firstpage
    540
  • Lastpage
    543
  • Abstract
    The generation of protein data is increasing exponentially with the rapid development of experimental technology. It is becoming a major issue for bioinformatics scientists to find an efficient method for retrieving and visualizing the protein structures. In this paper, we present a novel approach that uses the dihedral information of a specific protein to query the spatial structures from public databases. Furthermore, we implemented the visualization of the dihedral information of the queried database.
  • Keywords
    bioinformatics; molecular biophysics; molecular configurations; proteins; query processing; bioinformatics; dihedral information; protein data generation; protein structure visualization; public databases; queried database; spatial index; specific protein; Data visualization; Databases; Hidden Markov models; Protein engineering; Proteins; Shape; Spirals; protein structure; spatial index; visualization;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Bioinformatics and Biomedicine Workshops (BIBMW), 2012 IEEE International Conference on
  • Conference_Location
    Philadelphia, PA
  • Print_ISBN
    978-1-4673-2746-6
  • Electronic_ISBN
    978-1-4673-2744-2
  • Type

    conf

  • DOI
    10.1109/BIBMW.2012.6470197
  • Filename
    6470197