The Core and Pan-Genome of the Vibrionaceae

Author

Lilburn, Timothy G. ; Cai, Hong ; Gu, Jianying

Author_Institution

Dept. of Bacteriology, American Type Culture Collection, Manassas, VA, USA

fYear

2009

fDate

3-5 Aug. 2009

Firstpage

84

Lastpage

90

Abstract

Species of the family Vibrionaceae are ubiquitous in marine environments and the family contains numerous important pathogens of humans and marine species. In order to find the core, accessory and pan-proteome of this family, we deduced the complete set of orthologs for eleven strains from this family. The core proteome consists of 1,882 groups of orthologs, which is 28% of the 6,629 orthologous groups in this family. The composition of the proteomes are reflective of the differing evolutionary trajectories followed by different strains to similar phenotypes.

Keywords

evolution (biological); genomics; microorganisms; proteins; proteomics; Vibrionaceae; comparative genomics; evolutionary trajectories; marine environment; orthologous protein; pan-proteome; pathogens; Bioinformatics; Biology computing; Capacitive sensors; Diseases; Genomics; Humans; Marine animals; Organisms; Pathogens; Systems biology; Vibrionaceae; comparative genomics; core proteome; orthologous proteins;

fLanguage

English

Publisher

ieee

Conference_Titel

Bioinformatics, Systems Biology and Intelligent Computing, 2009. IJCBS '09. International Joint Conference on

Conference_Location

Shanghai

Print_ISBN

978-0-7695-3739-9

Type

conf

DOI

10.1109/IJCBS.2009.60

Filename

5260735