• DocumentCode
    3496335
  • Title

    Space-efficient read indexing and retrieval based on compressed de Bruijn graphs

  • Author

    Almutairy, Meznah ; Fish, Jordan ; Brown, C. Titus

  • Author_Institution
    Comput. Sci. & Eng., Michigan State Univ., East Lansing, MI, USA
  • fYear
    2013
  • fDate
    12-14 June 2013
  • Firstpage
    1
  • Lastpage
    1
  • Abstract
    We introduce a short-read indexing and retrieval scheme based on a compressed de Bruijn graph data structure.
  • Keywords
    biology computing; data structures; graph theory; indexing; information retrieval; compressed de Bruijn graph data structure; short-read indexing scheme; short-read retrieval scheme; space-efficient read indexing; space-efficient read retrieval; Assembly; Bioinformatics; Computer science; Data structures; Electronic mail; Indexing;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Computational Advances in Bio and Medical Sciences (ICCABS), 2013 IEEE 3rd International Conference on
  • Conference_Location
    New Orleans, LA
  • Type

    conf

  • DOI
    10.1109/ICCABS.2013.6629233
  • Filename
    6629233
    • Link To Document
    https://search.isc.ac/dl/search/defaultta.aspx?DTC=49&DC=3496335