Title :
Transcriptome assembly and quantification from Ion Torrent RNA-Seq data
Author :
Mangul, Serghei ; Al Seesi, Sahar ; Mandoiu, Ion ; Caciula, Adrian ; Zelikovsky, Alex ; Brinza, Dumitru
Author_Institution :
Dept. of Comput. Sci., Univ. of California, Los Angeles, Los Angeles, CA, USA
Abstract :
We propose novel method for transcriptome reconstruction and quantitation of both known and novel transcripts from Ion Torrent RNA-Seq reads.
Keywords :
RNA; genomics; molecular biophysics; ion Torrent RNA-Seq data read; transcriptome assembly; transcriptome quantification; transcriptome reconstruction; Accuracy; Assembly; Bioinformatics; Computer science; Educational institutions; Electronic mail; Splicing;
Conference_Titel :
Computational Advances in Bio and Medical Sciences (ICCABS), 2013 IEEE 3rd International Conference on
Conference_Location :
New Orleans, LA
DOI :
10.1109/ICCABS.2013.6629235
