DocumentCode
3501169
Title
The Petacomp Machine - A MIMD Cluster for Parallel Pattern-mining
Author
Birkeland, Olaf René ; Snøve, Ola, Jr. ; Halaas, Arne ; Nedland, Magnar ; Sætrom, Pål
Author_Institution
Interagon AS, Trondheim
fYear
2006
fDate
25-28 Sept. 2006
Firstpage
1
Lastpage
10
Abstract
Multiple instruction stream-single data stream (MISD) architectures have not found many practical applications in supercomputing. We present a multiple instruction stream-multiple data stream (MIMD) cluster implementation that uses MISD search processors with extreme pattern mining performance as a building block. We use PCI cards that hold sixteen search processors with local memory to build a relatively small cluster of five PC nodes with six PCI cards each. This cluster can handle anything between 64 independent queries at 48 GB per second, to 30,720 independent queries at 100 MB per second. The cluster´s performance characteristics are such that we can easily scale the system to 1015 operations per second with containable overhead using just 100 nodes. Further, the solution has lower power consumption and memory bandwidth requirements than comparable technologies.
Keywords
data mining; parallel machines; workstation clusters; MIMD cluster; MISD search processor; multiple instruction stream-multiple data stream cluster; parallel pattern-mining; petacomp machine; Costs; DNA; Energy consumption; Genetics; Hardware; Libraries; Probes; RNA; Sequences; Supercomputers;
fLanguage
English
Publisher
ieee
Conference_Titel
Cluster Computing, 2006 IEEE International Conference on
Conference_Location
Barcelona
ISSN
1552-5244
Print_ISBN
1-4244-0327-8
Electronic_ISBN
1552-5244
Type
conf
DOI
10.1109/CLUSTR.2006.311838
Filename
4100344
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