• DocumentCode
    3501169
  • Title

    The Petacomp Machine - A MIMD Cluster for Parallel Pattern-mining

  • Author

    Birkeland, Olaf René ; Snøve, Ola, Jr. ; Halaas, Arne ; Nedland, Magnar ; Sætrom, Pål

  • Author_Institution
    Interagon AS, Trondheim
  • fYear
    2006
  • fDate
    25-28 Sept. 2006
  • Firstpage
    1
  • Lastpage
    10
  • Abstract
    Multiple instruction stream-single data stream (MISD) architectures have not found many practical applications in supercomputing. We present a multiple instruction stream-multiple data stream (MIMD) cluster implementation that uses MISD search processors with extreme pattern mining performance as a building block. We use PCI cards that hold sixteen search processors with local memory to build a relatively small cluster of five PC nodes with six PCI cards each. This cluster can handle anything between 64 independent queries at 48 GB per second, to 30,720 independent queries at 100 MB per second. The cluster´s performance characteristics are such that we can easily scale the system to 1015 operations per second with containable overhead using just 100 nodes. Further, the solution has lower power consumption and memory bandwidth requirements than comparable technologies.
  • Keywords
    data mining; parallel machines; workstation clusters; MIMD cluster; MISD search processor; multiple instruction stream-multiple data stream cluster; parallel pattern-mining; petacomp machine; Costs; DNA; Energy consumption; Genetics; Hardware; Libraries; Probes; RNA; Sequences; Supercomputers;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Cluster Computing, 2006 IEEE International Conference on
  • Conference_Location
    Barcelona
  • ISSN
    1552-5244
  • Print_ISBN
    1-4244-0327-8
  • Electronic_ISBN
    1552-5244
  • Type

    conf

  • DOI
    10.1109/CLUSTR.2006.311838
  • Filename
    4100344