Title :
Bayesian biclustering with the plaid model
Author :
Caldas, José ; Kaski, Samuel
Author_Institution :
Dept. of Inf. & Comput. Sci., Helsinki Univ. of Technol., Helsinki
Abstract :
Biclustering is an active and promising research topic in unsupervised learning. With the aim of uncovering condition-specific similarities between objects, it may be applied in areas such as collaborative filtering and bioinformatics. The plaid model is amongst the most flexible biclustering models. However, its potential has not yet been fully explored. In this paper we extend the plaid model with a Bayesian framework and a collapsed Gibbs sampler. We show that the new method is useful in a gene expression study both in finding gene-specific associations between microarrays and condition-specific associations between genes.
Keywords :
Bayes methods; biology computing; genetics; pattern clustering; unsupervised learning; Bayesian biclustering; collapsed Gibbs sampler; gene expression analysis; plaid model; unsupervised learning; Bayesian methods; Clustering algorithms; Collaboration; Computer science; Filtering; Gene expression; Inference algorithms; Information technology; Motion pictures; Unsupervised learning;
Conference_Titel :
Machine Learning for Signal Processing, 2008. MLSP 2008. IEEE Workshop on
Conference_Location :
Cancun
Print_ISBN :
978-1-4244-2375-0
Electronic_ISBN :
1551-2541
DOI :
10.1109/MLSP.2008.4685495