DocumentCode
3543608
Title
A Genetic Approximation of Closest String via Rank Distance
Author
Dinu, Liviu P. ; Ionescu, Radu
Author_Institution
Fac. of Math. & Comput. Sci., Univ. of Bucharest, Bucharest, Romania
fYear
2011
fDate
26-29 Sept. 2011
Firstpage
207
Lastpage
214
Abstract
This paper aims to fully present a new genetic approach that uses rank distance for solving two known NP complete problems: closest string and closest sub string. We build a genetic algorithm for each of the two problems and we describe the genetic operations involved. The genetic algorithm adapted for the closest sub string problem uses standard genetic operations, while the genetic operations for the closest string problem are only inspired from nature. Both genetic algorithms bring something new by using a fitness function based on rank distance. The tests for both problems show that our genetic approach via rank distance has good results.
Keywords
genetic algorithms; string matching; NP complete problem; closest sub string problem; fitness function; genetic algorithm; genetic approximation; rank distance; standard genetic operation; Biological cells; Computational biology; DNA; Genetic algorithms; Hamming distance; Indexes; closest string; genetic algorithm; rank distance;
fLanguage
English
Publisher
ieee
Conference_Titel
Symbolic and Numeric Algorithms for Scientific Computing (SYNASC), 2011 13th International Symposium on
Conference_Location
Timisoara
Print_ISBN
978-1-4673-0207-4
Type
conf
DOI
10.1109/SYNASC.2011.31
Filename
6169582
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