• DocumentCode
    3543608
  • Title

    A Genetic Approximation of Closest String via Rank Distance

  • Author

    Dinu, Liviu P. ; Ionescu, Radu

  • Author_Institution
    Fac. of Math. & Comput. Sci., Univ. of Bucharest, Bucharest, Romania
  • fYear
    2011
  • fDate
    26-29 Sept. 2011
  • Firstpage
    207
  • Lastpage
    214
  • Abstract
    This paper aims to fully present a new genetic approach that uses rank distance for solving two known NP complete problems: closest string and closest sub string. We build a genetic algorithm for each of the two problems and we describe the genetic operations involved. The genetic algorithm adapted for the closest sub string problem uses standard genetic operations, while the genetic operations for the closest string problem are only inspired from nature. Both genetic algorithms bring something new by using a fitness function based on rank distance. The tests for both problems show that our genetic approach via rank distance has good results.
  • Keywords
    genetic algorithms; string matching; NP complete problem; closest sub string problem; fitness function; genetic algorithm; genetic approximation; rank distance; standard genetic operation; Biological cells; Computational biology; DNA; Genetic algorithms; Hamming distance; Indexes; closest string; genetic algorithm; rank distance;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Symbolic and Numeric Algorithms for Scientific Computing (SYNASC), 2011 13th International Symposium on
  • Conference_Location
    Timisoara
  • Print_ISBN
    978-1-4673-0207-4
  • Type

    conf

  • DOI
    10.1109/SYNASC.2011.31
  • Filename
    6169582