Title :
A Genetic Approximation of Closest String via Rank Distance
Author :
Dinu, Liviu P. ; Ionescu, Radu
Author_Institution :
Fac. of Math. & Comput. Sci., Univ. of Bucharest, Bucharest, Romania
Abstract :
This paper aims to fully present a new genetic approach that uses rank distance for solving two known NP complete problems: closest string and closest sub string. We build a genetic algorithm for each of the two problems and we describe the genetic operations involved. The genetic algorithm adapted for the closest sub string problem uses standard genetic operations, while the genetic operations for the closest string problem are only inspired from nature. Both genetic algorithms bring something new by using a fitness function based on rank distance. The tests for both problems show that our genetic approach via rank distance has good results.
Keywords :
genetic algorithms; string matching; NP complete problem; closest sub string problem; fitness function; genetic algorithm; genetic approximation; rank distance; standard genetic operation; Biological cells; Computational biology; DNA; Genetic algorithms; Hamming distance; Indexes; closest string; genetic algorithm; rank distance;
Conference_Titel :
Symbolic and Numeric Algorithms for Scientific Computing (SYNASC), 2011 13th International Symposium on
Conference_Location :
Timisoara
Print_ISBN :
978-1-4673-0207-4
DOI :
10.1109/SYNASC.2011.31