DocumentCode :
3564138
Title :
Continuous Dynamic Bayesian Network for gene regulatory network modelling
Author :
Baba, Norhaini ; Lian En Chai ; Mohamad, Mohd Saberi ; Zainuddin, Muhammad Mahfuz ; Salleh, Abdul Hakim Mohamed ; Deris, Safaai ; Hijazi, Mohd Hanafi Ahmad
Author_Institution :
Artificial Intell. & Bioinf. Group, Univ. Teknol. Malaysia, Skudai, Malaysia
fYear :
2014
Firstpage :
1
Lastpage :
5
Abstract :
In order to understand the underlying function of organisms, it is necessary to study the behaviour of genes in a gene regulatory network context. Several computational approaches are available for modelling gene regulatory networks with different datasets. Hence, this research is conducted to model the gene regulatory gene network using the proposed computational approach which is the Dynamic Bayesian Network. Dynamic Bayesian Network (DBN) is extensively used to construct GRNs based on its ability to handle microarray data and modelling feedback loops (cyclic regulation). The DBN approach is then extended to the continuous Dynamic Bayesian Network (cDBN) to construct a gene regulatory network with continuous data without discretization. The performance of the constructed gene networks of Saccharomyces cerevisiae were evaluated and compared with the previous works. At the end of this research, the gene networks constructed for Saccharomy cescerevisiae discovered more potential interactions between genes. Therefore, it can be concluded that the performance of the gene regulatory networks constructed using continuous dynamic Bayesian networks in this research is proven to be better because it can reveal more gene relationships as well as allowing feedback loops or cyclic regulation.
Keywords :
belief networks; genetics; GRN; Saccharomy cescerevisiae; cDBN approach; continuous dynamic bayesian network; cyclic regulation; discretization; gene regulatory network modelling; microarray data; modelling feedback loop; Bayes methods; Bioinformatics; Computational modeling; Data models; Gene expression; Hidden Markov models; Time series analysis; dynamic bayesian network; gene expression data; gene regulatory networks;
fLanguage :
English
Publisher :
ieee
Conference_Titel :
Computational Science and Technology (ICCST), 2014 International Conference on
Type :
conf
DOI :
10.1109/ICCST.2014.7045200
Filename :
7045200
Link To Document :
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