Title :
Recognizing Short Tandem Repeat Regions in Genomic Sequences Using Wavelet
Author :
Padole, Mamta C.
Author_Institution :
Dept. of Comput. Sci. & Eng., Maharaja Sayajirao Univ. of Baroda, Kalabhavan, India
Abstract :
Short Tandem Repeats (STRs) in DNA sequences are associated with regulatory mechanisms. Existing tools for recognizing STRs, involve computational intensive string processing methods expecting parameters like pattern, pattern size or reference. This paper proposes ab initio, signal processing approach involving Wavelet Transformations, for detecting perfect, imperfect and interrupted STR regions.
Keywords :
DNA; ab initio calculations; genomics; medical signal detection; wavelet transforms; DNA sequences; ab initio; computational intensive string processing methods; genomic sequences; imperfect STR regions detection; interrupted STR regions detection; pattern size; regulatory mechanisms; short tandem repeat regions recognition; signal processing approach; wavelet transformations; DNA; Discrete wavelet transforms; Genomics; Market research; Signal processing; Haar Wavelets; Microsatellites; Pattern Recognition; Short Tandem Repeats; Signal Processing; Wavelet; Wavelet Transforms;
Conference_Titel :
Mathematics and Computers in Sciences and in Industry (MCSI), 2014 International Conference on
Print_ISBN :
978-1-4799-4744-7
DOI :
10.1109/MCSI.2014.50
