DocumentCode :
3851370
Title :
Brute force meets Bruno force in parameter optimisation: introduction of novel constraints for parameter accuracy improvement by symbolic computation
Author :
M. Nakatsui;K. Horimoto;F. Lemaire;A. Urguplu;A. Sedoglavic;F. Boulier
Author_Institution :
Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)
Volume :
5
Issue :
5
fYear :
2011
fDate :
9/1/2011 12:00:00 AM
Firstpage :
281
Lastpage :
292
Abstract :
Recent remarkable advances in computer performance have enabled us to estimate parameter values by the huge power of numerical computation, the so-called `Brute force`, resulting in the high-speed simultaneous estimation of a large number of parameter values. However, these advancements have not been fully utilised to improve the accuracy of parameter estimation. Here the authors review a novel method for parameter estimation using symbolic computation power, `Bruno force`, named after Bruno Buchberger, who found the Grobner base. In the method, the objective functions combining the symbolic computation techniques are formulated. First, the authors utilise a symbolic computation technique, differential elimination, which symbolically reduces an equivalent system of differential equations to a system in a given model. Second, since its equivalent system is frequently composed of large equations, the system is further simplified by another symbolic computation. The performance of the authors` method for parameter accuracy improvement is illustrated by two representative models in biology, a simple cascade model and a negative feedback model in comparison with the previous numerical methods. Finally, the limits and extensions of the authors` method are discussed, in terms of the possible power of `Bruno force` for the development of a new horizon in parameter estimation.
Journal_Title :
IET Systems Biology
Publisher :
iet
ISSN :
1751-8849
Type :
jour
DOI :
10.1049/iet-syb.2010.0051
Filename :
6055272
Link To Document :
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