DocumentCode
415731
Title
Identifying projected clusters from gene expression profiles
Author
Yip, Kevin Y. ; Cheung, Kei-Hoi ; Ng, Michael K. ; Kei-Hoi Cheung
Author_Institution
Hong Kong Univ., China
fYear
2004
fDate
19-21 May 2004
Firstpage
259
Lastpage
266
Abstract
In microarray gene expression data, clusters may hide in subspaces. Traditional clustering algorithms that make use of similarity measurements in the full input space may fail to detect the clusters. In recent years a number of algorithms have been proposed to identify this kind of projected clusters, but many of them rely on some critical parameters whose proper values are hard for users to determine. In this paper a new algorithm that dynamically adjusts its internal thresholds is proposed. It has a low dependency on user parameters while allowing users to input some domain knowledge should they be available. Experimental results show that the algorithm is capable of identifying some interesting projected clusters from real microarray data.
Keywords
DNA; biology computing; data mining; genetics; molecular biophysics; pattern clustering; user interfaces; gene expression profiles; projected clusters identification; user-input knowledge; Clustering algorithms; Clustering methods; Data analysis; Data mining; Euclidean distance; Gene expression; Heuristic algorithms; Neoplasms; Visualization;
fLanguage
English
Publisher
ieee
Conference_Titel
Bioinformatics and Bioengineering, 2004. BIBE 2004. Proceedings. Fourth IEEE Symposium on
Print_ISBN
0-7695-2173-8
Type
conf
DOI
10.1109/BIBE.2004.1317352
Filename
1317352
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