• DocumentCode
    45782
  • Title

    Improving Detection of Driver Genes: Power-Law Null Model of Copy Number Variation in Cancer

  • Author

    Loohuis, Loes Olde ; Witzel, Andreas ; Mishra, Bud

  • Author_Institution
    Center for Neurobehavioral Genetics, Univ. of California Los Angeles, Los Angeles, CA, USA
  • Volume
    11
  • Issue
    6
  • fYear
    2014
  • fDate
    Nov.-Dec. 1 2014
  • Firstpage
    1260
  • Lastpage
    1263
  • Abstract
    In this paper, we study Copy Number Variation (CNV) data. The underlying process generating CNV segments is generally assumed to be memory-less, giving rise to an exponential distribution of segment lengths. In this paper, we provide evidence from cancer patient data, which suggests that this generative model is too simplistic, and that segment lengths follow a power-law distribution instead. We conjecture a simple preferential attachment generative model that provides the basis for the observed power-law distribution. We then show how an existing statistical method for detecting cancer driver genes can be improved by incorporating the power-law distribution in the null model.
  • Keywords
    bioinformatics; cancer; exponential distribution; genetics; cancer patient data; copy number variation; driver gene detection; exponential distribution; power-law distribution; power-law null model; process generating CNV segments; segment lengths; simple preferential attachment generative model; statistical method; Bioinformatics; Cancer; Computational biology; Computational modeling; Data models; Genomics; Copy number variation; cancer driver genes detection; generativemechanism; power-law distribution;
  • fLanguage
    English
  • Journal_Title
    Computational Biology and Bioinformatics, IEEE/ACM Transactions on
  • Publisher
    ieee
  • ISSN
    1545-5963
  • Type

    jour

  • DOI
    10.1109/TCBB.2014.2351805
  • Filename
    6883143