Geometrical Evolutional Study on H5N1(HA) at Different Regions

Author

Yang, Yan-ling

Author_Institution

Key Lab. for Biophys., Universities of Shandong, De Zhou, China

Volume

2

fYear

2009

fDate

21-22 May 2009

Firstpage

245

Lastpage

248

Abstract

The Avian Influenza has been more than 120 years since it broke out in Italy in 1878. It made many countries suffer a lot. It becomes very important to research the cause of the Avian Influenza and its features. There are many approaches to study the Avian Influenza virus (AIV). Among these methods the Z curve is a very useful method for visualizing and analyzing DNA sequences. This paper picks up some DNA sequences of the AIV H5N1 (HA) from the NCBI database, which root in same hosts--chicken but occurred in Thailand, Laos, Israel, Vietnam, India and Egypt, respectively, in 2008. Based on the Z Curve Theory, we draw Z-curves and analyze them, then calculate the base content, respectively. The results show that the corresponding Z curves of the sequences have some special geometrical features. It proves the aberrance or evolution of H5N1 (HA) relates with different areas closely.

Keywords

DNA; bioinformatics; evolution (biological); genomics; microorganisms; molecular biophysics; DNA sequence analysis; DNA sequence visualisation; H5N1 (HA) aberrance; H5N1 (HA) evolution; H5N1(HA) DNA sequence; NCBI database; Z curve; avian Influenza virus; avian influenza geometrical evolution; Bioinformatics; DNA; Educational institutions; Genomics; Influenza; Pathogens; Physics computing; Region 1; Sequences; Spatial databases;

fLanguage

English

Publisher

ieee

Conference_Titel

Information and Computing Science, 2009. ICIC '09. Second International Conference on

Conference_Location

Manchester

Print_ISBN

978-0-7695-3634-7

Type

conf

DOI

10.1109/ICIC.2009.172

Filename

5169056