Title :
Protein remote homology detection
Author :
Ying Li ; Yujing Guan ; Zhang Huaiguo ; Liang, Yung C.
Author_Institution :
Symbol Comput. & Knowledge Eng. Lab. of Minist. of Educ., Jilin Univ., Changchun, China
Abstract :
In this paper, a novel protein remote homology detection algorithm based on multiple heterogeneous biological features and kernel affinity propagation clustering is proposed. The kernel method is used to integrate the heterogeneous data sources related to protein remote homolog. In addition prediction accuracy method is extended to validate our proposed algorithm.
Keywords :
biology computing; pattern clustering; proteins; heterogeneous biological features; kernel affinity propagation clustering; prediction accuracy method; protein remote homology detection; Accuracy; Amino acids; Bioinformatics; Clustering algorithms; Feature extraction; Kernel; Proteins; affinity propagation clustering; heterogeneous features; kernel; protein remote homology detection;
Conference_Titel :
Natural Computation (ICNC), 2010 Sixth International Conference on
Conference_Location :
Yantai, Shandong
Print_ISBN :
978-1-4244-5958-2
DOI :
10.1109/ICNC.2010.5583129
