Title :
AFLP runner (AR): A software for prediction and analysis Of AFLP
Author :
Zhang, Meng ; Liang, Shujian ; Huang, Lei ; Sun, Yeqing ; Zhou, Jian ; Wang, Chunli
Author_Institution :
Sch. of Astronaut., Harbin Inst. of Technol., Harbin, China
Abstract :
AFLP is a PCR-based tool used in genetics research and DNA fingerprinting. Predicting the result and selecting the right primers play key roles in AFLP. Software called AFLP Runner (AR) was developed for AFLP predicting and analyzing. AR is a software based KMP algorithm for finding restriction enzyme cutting site sequence in genome. AR can be used for all organisms´ AFLP primers selecting, bands information predicting and enzyme cutting site distributing. The accuracy of AR was tested using AFLP experiment of Nipponbare (O. sativa ssp. Japonica ) and the result show that result of AR was coincided well with the experiment.
Keywords :
DNA; biochemistry; bioinformatics; enzymes; genetics; molecular biophysics; prediction theory; AFLP Runner; AFLP primers selection; DNA fingerprinting; KMP algorithm; Nipponbare; O. sativa ssp. Japonica; PCR-based tool; amplified fragment length polymorphism PCR; analysis software; bands information prediction; enzyme cutting site distribution; genetics research; genome; prediction software; restriction enzyme cutting site sequence; Algorithm design and analysis; Biochemistry; Bioinformatics; Genomics; Organisms; Software; Software algorithms; AFLP; EcoR I; KMP; Mse I; software;
Conference_Titel :
Biomedical Engineering and Informatics (BMEI), 2010 3rd International Conference on
Conference_Location :
Yantai
Print_ISBN :
978-1-4244-6495-1
DOI :
10.1109/BMEI.2010.5639293
