• DocumentCode
    553234
  • Title

    The study of ovarian carcinoma gene regulatory mechanism based on the shortest path algorithm and conditional probabilities

  • Author

    Jui-Ming Chen ; Meng-Hsiun Tsai ; Shih-Huei Wang ; Sheng-Hsiung Chiu

  • Author_Institution
    Dept. of Endocrinology & Metabolism, Tungs´ Taichung MetroHarbor Hosp. Taiwan, Taichung, Taiwan
  • Volume
    3
  • fYear
    2011
  • fDate
    26-28 July 2011
  • Firstpage
    1638
  • Lastpage
    1642
  • Abstract
    In the current cancer research field, microarray is one of the most commonly used tools. It has the advantage of containing a large amount of data, which helped us in recording gene expressions in cancer and comparing the difference between normal cells and cancer cells. However, contemporary cancer research does not have a positive definition in how to analyze the microarray data. In this essay, we utilize the microarray data from the carcinoma cancer as primary sample. And we apply statistical methods and mathematical calculations to establish a diseases analyzing model. At first, we use principal component analysis to process the pre-selected data. Then we use ANOVA to select the genes with significant expression differences to be our target genes. Finally we use supervised learning method to evaluate the accuracy of classification. This analytical model helps to reduce the number of incorrect attempts and cut down the time which has to be spent in experiments. This model can analyze complicated cancer expression data, and it can also be useful in researches for other diseases.
  • Keywords
    bioinformatics; diseases; genetic engineering; learning (artificial intelligence); pattern classification; principal component analysis; ANOVA; carcinoma cancer cells; classification; conditional probabilities; diseases; gene expressions; microarray data; ovarian carcinoma gene regulatory mechanism; principal component analysis; shortest path algorithm; supervised learning; Accuracy; Analysis of variance; Cancer; Decision trees; Gene expression; Principal component analysis; Tumors; Analysis of Variance; Gene regulator network; Principal component analysis; Supervised learning;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Fuzzy Systems and Knowledge Discovery (FSKD), 2011 Eighth International Conference on
  • Conference_Location
    Shanghai
  • Print_ISBN
    978-1-61284-180-9
  • Type

    conf

  • DOI
    10.1109/FSKD.2011.6019914
  • Filename
    6019914