• DocumentCode
    570205
  • Title

    Developing an open source, reusable platform for distributed collaborative information management in the Early Detection Research Network

  • Author

    Hart, Andrew F. ; Verma, Rishi ; Mattmann, Chris A. ; Crichton, Daniel J. ; Kelly, Sean ; Kincaid, Heather ; Hughes, Steven ; Ramirez, Paul ; Goodale, Cameron ; Anton, Kristen ; Colbert, Maureen ; Downs, Robert R. ; Patriotis, Christos ; Srivastava, Sudhi

  • Author_Institution
    Jet Propulsion Lab., California Inst. of Technol., Pasadena, CA, USA
  • fYear
    2012
  • fDate
    8-10 Aug. 2012
  • Firstpage
    263
  • Lastpage
    270
  • Abstract
    For the past decade, the NASA Jet Propulsion Laboratory, in collaboration with Dartmouth University has served as the center for informatics for the Early Detection Research Network (EDRN). The EDRN is a multi-institution research effort funded by the U.S. National Cancer Institute (NCI) and tasked with identifying and validating biomarkers for the early detection of cancer. As the distributed network has grown, increasingly formal processes have been developed for the acquisition, curation, storage, and dissemination of heterogeneous research information assets, and an informatics infrastructure has emerged. In this paper we discuss the evolution of EDRN informatics, its success as a mechanism for distributed information integration, and the potential sustainability and reuse benefits of emerging efforts to make the platform components themselves open source. We describe our experience transitioning a large closed-source software system to a community-driven, open source project at the Apache Software Foundation, and point to lessons learned that will guide our present efforts to promote the reuse of the EDRN informatics infrastructure by a broader community.
  • Keywords
    bioinformatics; cancer; groupware; information dissemination; information storage; software reusability; Apache Software Foundation; Dartmouth University; EDRN informatics infrastructure; NASA Jet Propulsion Laboratory; US NCI; US National Cancer Institute; biomarker identification; biomarker validation; distributed collaborative information management; distributed information integration; distributed network; early cancer detection; early detection research network; formal processes; heterogeneous research information assets; informatics infrastructure; information acquisition; information curation; information dissemination; information storage; large closed-source software system; multiinstitution research; open source project; open source reusable platform; Biomarkers; Cancer; Informatics; Laboratories; NASA; Object oriented modeling; Software;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Information Reuse and Integration (IRI), 2012 IEEE 13th International Conference on
  • Conference_Location
    Las Vegas, NV
  • Print_ISBN
    978-1-4673-2282-9
  • Electronic_ISBN
    978-1-4673-2283-6
  • Type

    conf

  • DOI
    10.1109/IRI.2012.6303019
  • Filename
    6303019