Title :
Modeling and design automation of biological circuits and systems
Author :
Miskov-Zivanov, Natasa ; Faeder, James R. ; Myers, Chris J. ; Sauro, Herbert M.
Author_Institution :
Univ. of Pittsburgh, Pittsburgh, PA, USA
Abstract :
Circuit designers are increasingly more drawn to challenges in modeling and designing biological circuits and systems. While the principles of biological organization and architecture resemble those in systems that engineers are designing, the complexity of biological systems still seems to be beyond the designed ones. This session discusses state-of-the-art in tackling such challenges, and presents existing methods for automation of model development, design and analysis of biological circuits and systems. The speakers are experts from systems biology, synthetic biology, and design automation fields. The three talks will cover a range of topics that include rule-based modeling approach to model cell signaling networks, automation of genetic circuit design, and the importance and development of standards in synthetic biology.
Keywords :
biology computing; cellular biophysics; complex networks; genetics; knowledge based systems; modelling; molecular biophysics; analysis automation; biological architecture; biological circuit design automation; biological circuit modeling; biological organization; biological system design automation; biological system modeling; cell signaling networks; genetic circuit design automation; model development automation; rule based modeling; synthetic biology standards; systems biology; Biological system modeling; Computational modeling; Design automation; Genetics; Integrated circuit modeling; Standards; Synthetic biology; Systems biology; biodesign automation; biological parts; chemical reaction networks; genetic circuits; rule-based modeling; synthetic biology;
Conference_Titel :
Computer-Aided Design (ICCAD), 2012 IEEE/ACM International Conference on
Conference_Location :
San Jose, CA